Accession | Generic functions for GEOquery |
Accession-method | Class 'GEOData' |
Accession-method | Class 'GEODataTable' |
browseGEOAccession | Open the GEO page for a given accession |
browseWebsiteRNASeqSearch | Browse GEO search website for RNA-seq datasets |
coercion | Convert a GDS data structure to a BioConductor data structure |
Columns | Generic functions for GEOquery |
Columns-method | Class 'GEOData' |
Columns-method | Class 'GEODataTable' |
dataTable | Generic functions for GEOquery |
dataTable-method | Class 'GEOData' |
dataTable-method | Class 'GEODataTable' |
GDS-class | Class 'GDS' |
GDS2eSet | Convert a GDS data structure to a BioConductor data structure |
GDS2MA | Convert a GDS data structure to a BioConductor data structure |
GEOData-accessors | Generic functions for GEOquery |
GEOData-class | Class 'GEOData' |
GEODataTable-class | Class 'GEODataTable' |
getDirListing | get a directory listing from NCBI GEO |
getGEO | Get a GEO object from NCBI or file |
getGEOfile | Download a file from GEO soft file to the local machine |
getGEOSuppFiles | Get Supplemental Files from GEO |
getGSEDataTables | Get GSE data tables from GEO into R data structures. |
getRNASeqData | Get GEO RNA-seq quantifications as a SummarizedExperiment object |
getRNASeqQuantGenomeInfo | Extract genome build and species for GEO RNA-seq quantification |
GPL | Class 'GPL' |
GPL-class | Class 'GPL' |
GPL-method | Class 'GPL' |
GPLList | Generic functions for GEOquery |
GPLList-method | Class 'GSE' |
GSE-class | Class 'GSE' |
GSM-class | Class 'GSM' |
GSMList | Generic functions for GEOquery |
GSMList-method | Class 'GSE' |
hasRNASeqQuantifications | Does a GEO accession have RNA-seq quantifications? |
Meta | Generic functions for GEOquery |
Meta-method | Class 'GEOData' |
Meta-method | Class 'GEODataTable' |
Meta-method | Class 'GSE' |
parseGDS | Parse GEO text |
parseGEO | Parse GEO text |
parseGPL | Parse GEO text |
parseGSE | Parse GEO text |
parseGSM | Parse GEO text |
searchFieldsGEO | Provide a list of possible search fields for GEO search |
searchGEO | Search GEO database |
show-method | Class 'GEOData' |
show-method | Class 'GEODataTable' |
Table | Generic functions for GEOquery |
Table-method | Class 'GEOData' |
Table-method | Class 'GEODataTable' |
urlForAccession | The URL for a GEO accession |